YANG MING CHIAO TUNG INSTITUTE OF BIOMEDICAL INFORMATICS
| 碩士班 | 博士班 |
| 原生物資訊研究所畢業生 | |
| 原衛生資訊與決策研究所畢業生 | |
碩士班畢業生  |
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| 2020年畢業 |
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| 2019年畢業 |
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| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 王琳翔 | 黃彥華老師 | 探索高毒性且高抗藥性的克雷伯氏肺炎桿菌曝露於抗生素下，其小RNA參與調控的機制(Exploring the mechanism of small RNA involvement in the regulation of highly virulent and highly resistant ) |
| 謝馥媺 | 林振慶老師 | 異型小分子核醣核酸在肺腺癌的分析(Demonstration of 5ʹ Isoform MicroRNA in Lung Adenocarcinoma) |
| 張捷帆 | 巫坤品老師/ 蔡仁貞老師 | 全身性紅斑狼瘡之運動建議與系統建置-以android系統為例(Build Android Apps to Monitor Exercise for Systemic Lupus Erythematosus) |
| 林亞柔 | 郭博昭老師/ 黃宣誠老師 | 以多頻道睡眠訊號之深度學習進行自動分期(Decision making of sleep stage with deep learning of polysomonographic signals) |
| 黃千容 | 王禹超老師 | 鑑別可選擇性毒殺被B型肝炎病毒感染肝細胞之治療標靶基因() |
| 黃文毅 | 巫坤品老師 | 為膜蛋白裁切資料庫更新提供半自動化協助的深度學習工具(Deep Learning Tools for Semi-automated Assistance in the SheddomeDB Update) |
| 周韋廷 | 巫坤品老師 | 分泌蛋白質預測與資料庫建置的整合線上資源(An Integrated Online Resource of Secreted Protein Prediction and Database Construction) |
| 朱律安 | 巫坤品老師 | 利用機器學習方法於人類胞外體蛋白質的分析與預測模型之建立(The Prediction of Human Exosomal Proteins Using Machine Learning Approaches) |
| 葉大瑋 | 王禹超老師 | 鑑定不同癌症中的高突變負擔相關的基因和反應路徑(Identification of high mutation load associated genes and pathways across different cancers) |
| 張東涵 | 黃彥華老師 | 探討以人工誘導性多功能幹細胞建立的、具亨氏舞蹈症基因變異的丙胺基丁酸神經元，其SUPT4H1受抑制時，基因表現特徵與調控網路的改變(Alternation of the gene expression signature and implicated regulatory network of SUPT4H1 knockdown in GABAergic neurons derived from induced pluripotent stem cells of patients with Huntington’s disease (HD)) |
| 邱奕儒 | 張博論老師 | 多語系行動平台應用於居家長照之個案研究: 以照顧腦外傷患者為例(Multilingual mhealth platform for case studies of long-term care at home: Taking patients with brain trauma as an example) |
| 周佳儀 | 巫坤品老師 | 將圖像辨識應用於胃癌質譜資料之檢測(Image Recognition of Mass Spectra for Gastric Cancer Detection) |
| 李秉翰 | 楊永正老師 | 性別與台灣人肥胖症相關基因型的研究(Sex-related genetic predisposition of obesity in Taiwanese population) |
| 陳震 | 楊永正老師 | 以圖形資料庫建構罕見疾病特徵比對系統(Establishing a feature matching system for rare diseases using graph database) |
| 林英嘉 | 鍾翊方老師 | 以生成式對抗網路進行醫學影像資料擴增(Medical Data Augmentation Using Generative Adversarial Networks) |
| 許眾棠 | 鍾翊方老師／林振慶老師 | 分析發生在癌症轉錄體序列之核醣核酸編輯現象(Investigation of RNA editing on cancer transcriptome) |
| 林宗毅 | 楊永正老師 | 通用型疾病日記的設計與實作(The design and implementation of general-purpose disease diary system) |
| 2018年畢業 |
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| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 黃曼伶 | 鍾翊方老師／莊家峰老師 | 深度學習模型應用於判讀腎臟切片影像之腎絲球(Using deep learning model to identify glomerulus on renal biopsy pathological images) |
| 簡群恩 | 張博論老師 | 最新行動健康產學研之學習歷程(The latest trend of learning process in mobile health Industry-Academia-Research Cooperation) |
| 吳宜庭 | 楊永正老師 | 乳酸桿菌屬中精神益生株之序列研究(Sequence Analysis of the Psychobiotic Bacteria Strains of the Lactobacillus Species) |
| 李勁緯 | 張博論老師 | 雙語互動式照護平台應用於外籍者之初步研究(A preliminary study on the application of of bilingual interactive care platform to foreign caregivers) |
| 沈欣玫 | 劉德明老師 | 以嚴肅遊戲概念開發運動處方平台-以僵直性脊椎炎患者為例(Developing an Exercise Prescription Web Platform with Serious Game Concepts for Patients with Ankylosing Spondylitis) |
| 倪崇恩 | 黃彥華老師 | 利用轉錄組分析揭示高毒性且高抗藥性的克雷伯氏肺炎桿菌受到壓力時的反應機制(Transcriptome profiling reveals the underlying mechanisms of stress responses of a high-virulence and drug-resistance Klebsiella pneumoniae strain) |
| 葉欣澔 | 巫坤品老師 | 利用心電圖訊號偵測心律不整之心室顫動(Detecting ventricular fibrillation by electrocardiography) |
| 施丞洋 | 巫坤品老師 | 重症加護病患之急性低血壓預測(Prediction of Acute Hypotension Episodes for Patients in Intensive Care Units) |
| 張郁琳 | 林振慶老師 | 鑑定人類癌症基因體中影響存活的基因(Characterization of Survival Influential Genes in Cancer Genomes) |
| 葉皓暐 | 鍾翊方老師／鄭維中老師 | 設計一個二次目標函式以鑑定癌症驅動基因組(Identification of Driver Gene Sets in Cancer by Designing Quadratic Objective Function) |
| 施皓軒 | 李國彬老師 | 探討在高維度生物資訊學習方法的過適問題(An exploration of overfitting in feature-rich bioinformatics learning methods) |
| 蔡宗軒 | 黃宣誠老師 | 長鏈非編碼核糖核酸調控網路整合分析研究平台(Lncternet: a web-based application for integrative analysis of lncRNA modulation networks) |
| 鄭博營 | 黃宣誠老師 | 個人基因變異與疾病關聯視覺化系統(Web-based visualization system for individual gene variants and their associated diseases) |
| 黃俊諺 | 張博論老師 | 利用行動裝置應用程式輔助急診臨床醫師作肺栓塞之診斷決策(Using mobile device application support emergency clinical physician in diagnostic decision of pulmonary embolism) |
| 徐子述 | 黃宣誠老師／林盈仲老師 | 鑑定毛果楊木質素合成基因在乾旱脅迫下的直接調控者(Identification of direct regulators of monolignol biosysthesis genes during drought stress in Populus trichocarpa) |
| 王淑麗 | 張博論老師 | 應用使用者自建策略開發病房工作日誌系統(The Use of End User Computing Strategy to Develop a Ward Daily Documentation System) |
| 陳雅玲 | 劉德明老師 | 醫病共享決策互動式決策輔助工具開發之研究-以骨質疏鬆症為例(Research on the Development of Interactive Decision Aids for Sharing Decision making-Osteoporosis as an example) |
| 方煒甯 | 楊永正老師 | 台灣人基因型與肥胖症的相關研究(Association study of the genotype and obesity in Taiwanese population) |
| 葉紓彣 | 鍾翊方老師／鄭維中老師 | 利用山岳刪減群聚法尋找臨床相關癌症突變熱區(Identification of clinically associated mutation cancer hotspots using mountain subtractive clustering) |
| 林盈辰 | 林振慶老師 | 分析人類癌症基因體中的合成交互作用網路(Identification and Characterization of Synthetic Interaction Network in Human Cancer Genomes) |
| 張詠銓 | 林振慶老師 | 建立不同癌症中與存活相關的交互作用資料庫(Establish a Web-based Database for Survival-associated Interactions in Cancers) |
| 2017年畢業 |
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| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 陳彥宏 | 李國彬老師 | 使用蛋白質序列、結構與物理化學性質預測 Hub 蛋白質(Predicting hub proteins using protein sequence, protein structure and physicochemical properties) |
| 劉育丞 | 許世宜老師 | 研究人類端粒DNA鳥嘌呤四股結構構型變化的機制(To study the mechanism of conformational changes of the human telomeric DNA G-quadruplex) |
| 戴珮瑄 | 黃宣誠老師 | 乳癌中超級增強子核醣核酸與基因共表現網路之關係(Super-enhancer RNA associated gene co-expression networks in breast cancer cell) |
| 吳佩蓉 | 張博論老師 | 智慧型手機於建立冠心病用藥管理之研究(Development of Smartphone-based Medication Management Application for Coronary Artery Disease) |
| 黃威智 | 劉德明老師 | 應用類神經網路預測醫院之院內心跳停止-以台北某醫學中心為例(Using Artificial Neural Networks to Predict In-Hospital Cardiac Arrest Patients at a Medical Centre in Taipei) |
| 林青芸 | 劉德明老師／潘美連老師 | 以自然語言處理技術將敘述性研究論文文本轉為結構化文件之研究—以臺灣健保資料庫研究論文之收案條件為例(Research on Converting the Narrative Text of Scientific Research Articles into Structured Documents by Natural Language Processing) |
| 梁乃文 | 張博論老師 | 長者智慧型行動健康之通用設計之開發與應用(Development of Universal Design mHealth Interface for the Elderly) |
| 翁廷瑋 | 鍾翊方老師 | 以電腦斷層攝影像資料於區分EGFR+及EGFR-肺腺癌病人(Distinguish EGFR+ and EGFR- Patients in Lung adenocarcinoma using CT Images) |
| 劉宏翊 | 張博論老師 | 智慧型手機於建立居家照護之研究(Development of Smartphone-based for Homecare of Patient Instructions) |
| 謝宜軒 | 黃彥華老師 | 利用非負矩陣法分解人類肝癌組織中癌細胞與周遭細胞各別基因表現特徵(Using Non-negative matrix factorization to distinguish tumor- and storma- specific gene expression) |
| 呂冠毅 | 王禹超老師 | 建構突變負擔估計模型以預測癌症免疫療法的療效(Construction of mutation burden estimation model for predicting efficacy of cancer immunotherapy) |
| 葉時昊 | 劉德明老師 | 應用openEHR臨床指引定義語言建立急性腎損傷風險推論引擎(Applying the openEHR’s Guideline Definition Language to build Acute Kidney Injury Risk Inference Engine) |
| 張浤則 | 郭博昭老師／劉德明老師 | 建立一個微型遙測脈搏血氧監測系統：以鎮靜後恢復室為例(Establishing a Miniature Telemetric Monitoring System of Pulse Oximetry: The Case of Post-Sedation Recovery Room) |
| 黃仲瑜 | 巫坤品老師 | 調整 HPA Scoring 方法以排序癌症候選標記(Adjusted HPA Scoring for Prioritizing Cancer Marker Candidates) |
| 邱郁涵 | 許世宜老師 | 分子動力學模擬輔助設計中東呼吸症候群冠狀病毒似木瓜素蛋白水解酶抑制劑(Computer-aided design by molecular dynamics simulation for Middle East respiratory syndrome coronavirus papain-like protease inhibitors) |
| 周儀柔 | 劉德明老師 | 應用openEHR與臨床經驗建立血液透析決策輔助模型(Building a Hemodialysis Decision Support Model by using openEHR and Clinical Practices) |
| 周雯淇 | 巫坤品老師 | 臺灣日常急診流量資料彙整與初步資料分析(Data Cleansing and Analyzing of the Service Amount of Emergency Departments in Taiwan) |
| 郭帥立 | 郭博昭老師 | 以低功耗藍牙及三軸加速度計建構手機即時跌倒偵測系統(Development of a Fall Detection System on Android Based Smartphone and Accelerometry) |
| 蔡庭瑋 | 許世宜老師 | 以電腦輔助藥物設計探討人類胸苷酸激酶抑制劑(Investigating the inhibitors of hTMPK via Computer-Aided drug design) |
| 黃仁甫 | 劉德明老師 | 利用開放資料建立藥物腎毒性警示系統之雛形 - 以健康存摺為例(Using open data to establish a prototype warning system for drug nephrotoxicity - A case study of My Health Bank) |
| 陳子堯 | 王禹超老師 | 利用LINCS L1000大數據來研究未被註解之基因的功能(Investigating the functions of unannotated genes using LINCS L1000 big data) |
| 陳子廷 | 黃宣誠老師／林盈仲老師 | 木質素合成基因拷貝數量與S/G比率之間的相互關係(The correlation between the copy number of lignin biosynthesis genes and lignin S/G ratio.) |
| 黃世昕 | 黃宣誠老師／李御賢老師 | 建立利用PCR的定序資料分析人類MHC區域 之MICA基因單套體分型系統(A Pipeline to analyze MICA haplotype typing by polymerase chain reaction sequences) |
| 藍敏方 | 張博論老師／侯宜菁老師 | 乳癌婦女行動個人照護系統之雛型開發研究(Developing the Personal Mobile Application Prototype for Women with Breast Cancer) |
| 2016年畢業 |
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| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 杜岳華 | 黃宣誠老師 | 利用超級增強子核醣核酸辨識細胞狀態(Identification of cell states using super-enhancer RNA) |
| 金凱倫 | 楊永正老師 | 利用生物資訊方法尋找多麩胺醯酸疾病的共同基因調飾因子(A Pipeline to Detect Genetic Modifiers by Using Targeted Sequencing) |
| 呂紹民 | 鍾翊方老師 | 發展一個新方法用於搜尋癌症驅動基因組(A Novel Approach to Find Driver Gene Sets in Cancer) |
| 歐亦如 | 巫坤品老師 | 利用資訊方法進行藥物重新定位篩選(A computational approach for drug repositioning) |
| 陳日陞 | 巫坤品老師 | 以蛋白質交互作用網路與基因表現量預測癌症候選基因(Candidate Cancer Gene Prediction Based on Protein-Protein Interaction and Gene Expression) |
| 張雅琪 | 劉德明老師 | 建立臨床研究資料蒐集系統之使用者接受模型(Building the user acceptance model of clinical study data capture system) |
| 蔡青佑 | 黃宣誠老師 | 生物網路模組功能分類視覺化研究(HANAKO: Visualization of functional classification for targeted network module) |
| 林秉鴻 | 鍾翊方老師 | 利用山岳刪減群聚法找尋突變熱區(Identification of mutation hotspots using mountain) |
| 陳祈光 | 張博論老師 | 基於智慧型手機建置骨肉瘤病患出院追蹤系統(Developing Mobile Discharge Tracking System for Patients with Osteosarcoma) |
| 李旨雅 | 劉德明老師／黃衍文老師 | 應用視覺化工具分析臺灣防疫歷史資料庫探討疫苗介入後傳染病之發展(Development of Visualization Tools for Analyzing Taiwan Communicable Disease and Vaccination Historical Data) |
| 周昕毅 | 楊永正老師 | 於臨床試驗初期導入CDISC資料交換標準之研究(Using CDISC Standards from the Start of a Clinical Trial) |
| 張吟綺 | 楊永正老師 | 臨床試驗資料的去識別化、符合國際標準、與資料整合之研究(De-identification, Standard Compliance, and Data Integration Studies of a Clinical Trial) |
| 陳冠廷 | 張博論老師 | 居家睡眠監測技術開發與遠端睡眠建康照護應用(Technology Development of Home-Based Sleep Monitoring Application of Sleep Telecare Service) |
| 陳怡靜 | 鍾翊方老師 | 透過模糊邏輯模式挖掘不同型態的標誌基因：以間質幹細胞時序分化資料為例(Fuzzy modeling for discovering different types of marker genes from time-series mesenchymal stem cell NGS data) |
| 林家威 | 張博論老師 | 銀髮族智慧型行動健康介面設計探討與開發(Study and Design of Interface of the Mobile Health for the Elderly) |
| 楊沛佳 | 王禹超老師 | 建構單位基因電路模型以應用於基因電路之量化設計(Construction of a Unit Gene Circuit Model for Quantitative Gene Circuit Design) |
| 劉謹瑋 | 鍾翊方老師 | 發現癌症基因體之核醣核酸編輯(Discovery of RNA editing sites on cancer genome) |
| 盧佳妤 | 楊永正老師 | LINCS計畫之抑制基因表現量資料集的應用(Application of the gene expression knock-down data set in the LINCS project) |
| 徐銘鴻 | 巫坤品老師／趙淑妙老師 | 植物抗病基因於原始被子植物的演化(The evolution of plant disease resistance gene in the basal angiosperms) |
| 蘇子傑 | 鍾翊方老師 | 引入機器學習觀念於設計一方法以判讀錯義突變之影響(Introducing machine-learning concept into the design of an approach for predicting the effect of missense mutations) |
| 2015年畢業 |
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| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 鄭中遠 | 張傳雄老師／高淑芬老師 | 以支持向量機器學習方法分析對注意力不足/過動症之量表題目的評量能力(Analysis of ADHD Scale Items for Identifying Determinedㄎ Features Using Support Vector Machine) |
| 陳正達 | 楊永正老師 | 系統性比較預測方法與染色質免疫沈澱定序法所決定的MYC蛋白質之轉錄因子結合位置(Systematic Comparison of Predicted and ChIP-seq Determined Transcription Factor Binding Sites for MYC Protein) |
| 徐佳瑜 | 楊永正老師 | 單分子及時定序分析與台灣幽門螺旋桿菌之比較基因體研究(Single molecule real time (SMRT) sequence analysis and comparative genomics of Helicobacter pylori strains in Taiwan) |
| 李姿瑩 | 巫坤品老師 | 利用周氏胺基酸組成與基因本體論判定細胞外膜蛋白質(Plasma Membrane Proteins Identification Using Chou’s Pseudo Amino Acid Composition and Gene Ontology (GO) Annotation) |
| 呂佩珺 | 黃宣誠老師 | 長鏈非編碼核醣核酸之蛋白質交互作用網路關聯模組(Lncin: long non-coding RNA-associated modules in protein interaction networks) |
| 游文萱 | 黃宣誠老師 | 依內源性核酸競爭理論分層解析長鏈非編碼核糖核酸調控網路(Stratification of lncRNA modulation networks with ceRNA hypothesis) |
| 胡耿華 | 張博論老師 | 簡易行訓練盒對於醫學生學習內視鏡插管可行性研究(The feasibility of using a simple training box to train medical students in learning fiberoptic intubation) |
| 洪珮媛 | 劉德明老師 | 應用openEHR臨床指引定義語言建立慢性腎臟病臨床診療指引(Building a Clinical Guideline for Chronic Kidney Disease using openEHR’s Guideline Definition Language) |
| 張書豪 | 宋晏仁老師／劉德明老師 | 以非線性分布遞延模型評估AQI指標對心血管疾病的影響－以台北盆地為例(Using Distributed lag non-linear models evaluates impact of AQI on cardiovascular diseases in the Taipei Basin) |
| 盧亞伶 | 張博論老師 | 慢性腎臟病行動健康照護管理系統之開發(Developing Mobile Management System for Patients with Chronic Kidney Disease) |
| 陳思安 | 鍾翊方老師 | 利用16S rRNA基因定序資料進行兒童氣喘之呼吸道菌種分析(Airway Microbiota Analysis Using 16S rRNA Gene Sequencing Data for Childhood Asthma) |
| 汪琬芳 | 鍾翊方老師 | 分析癌症雙端轉錄體定序資料以建立融合基因加值資料庫(FusionBase: identification of fusion genes using cancer RNA sequencing data) |
| 林冠翰 | 巫坤品老師 | 依型態分布分類海馬齒狀迴中軸突- 軸突型神經元與籃狀神經元(Classification of Axo-axonic Cells and Basket Cells in Hippocampal Dentate Gyrus by Morphological Attributes) |
| 林玹墨 | 黃宣誠老師 | 分析LINCS細胞表現巨量數據萃取人類基因關連網路(Extracting Human Genetic Associations from Library of Integrated Network-based Cellular Signatures) |
| 邵繼泓 | 巫坤品老師 | 以代謝物質譜分析對於膀胱癌之診斷(Diagnosis for Bladder Cancer Based on Metabolites by Mass Spectrometry) |
| 林承翰 | 劉德明老師 | 行動化急診檢傷分類與查詢系統之設計與建置(Design and Implement a Mobilized Triage and Query System for Emergency Department) |
| 龔郁婷 | 張博論老師 | 行動話問卷調查輔助系統之開發(Developing the Mobile Documentation Support System) |
| 郭子顥 | 李國彬老師 | 從序列資訊分析與預測蛋白質交互作用位置(Characterization and Prediction of Protein-Protein Interaction Sites Using Sequence Information) |
| 2014年畢業 |
||
| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 賴維劭 | 劉德明老師 | 以自然語言處理工具增進電子臨床文件之語意互通性研究 – 以CDA為例(Research on Promoting Semantic Interoperabilityof Exchanged Clinical Documents by Nature Language Processing) |
| 蘇矩賢 | 張傳雄老師 | 以文獻探勘基因與基因關係重建大腸桿菌之生物反應網路(Reconstruction of Interaction Networks of Escherichia coli through Literature Mining of Gene-Gene Relations) |
| 蔡采珈 | 劉德明老師 | 建立可互通之臨床試驗表單研究(Research in Building the Interoperable Clinical Case Report Form) |
| 蔡煒詳 | 鍾翊方老師／王學偉老師 | 綜合評估雙端轉錄體定序資料之融合基因偵測工具(A comprehensive evaluation of fusion gene detection algorithms in paired-end RNA-Seq data) |
| 劉權德 | 王學偉老師／鍾翊方老師 | 研究長鏈非編碼核糖核酸之整合性次世代定序分析工具與資料庫(Integrative Analytical RNA-Seq toolkit and RNA-Seq database for lncRNA research) |
| 孫嘉岑 | 黃明經老師 | 從已完成定序的物種分析蛋白質模組區塊之結構及功能(A structural and functional analysis of protein domains from species usage in complete proteomes) |
| 唐瑋君 | 鍾翊方老師 | 以多目標演化式最佳化演算法挑選具有非線性關係之有用特徵(Selection of Useful Features with Non-linear Dependency Using a Multi-objective Evolutionary Optimization Algorithm) |
| 翁明靖 | 巫坤品老師 | 整合資料庫資料並使用適當的計分方式去尋找可能的生物調控路徑(Integrating human pathway database to identify significant subpathway with a refined scoring function) |
| 蔡政霖 | 彭智楹老師 | 以胞器空間分群建立自動化三維細胞分割系統(3D Cell Segmentation by Spatial Clustering of Subcellular Organelles) |
| 秦嗣涵 | 李國彬老師／吳韋訥老師 | 藉由簡化二十種胺基酸來尋找親緣關係較遠的蛋白質(Reduced amino acid alphabets for the detection of remote protein homologues) |
| 陳立中 | 張博論老師 | WiFi法室內定位之可行性研究(Location Awareness By Analyzing Ambient WiFi Signals) |
| 江文成 | 劉德明老師 | 基於角色之臨床試驗權限控制研究(The Research of Role Based Access Control in Clinical Trial) |
| 許嫚茹 | 黃宣誠老師 | 長鏈非編碼核糖核酸調控之網路特性分析(Characterization and Stratification of LncRNA Modulation Networks) |
| 黃丞駿 | 黃宣誠老師 | 乳癌微型核醣核酸與轉錄因子共調控模組之關聯研究(Identification of MicroRNA and Transcription-Factor Co-Regulatory Modules in Breast Cancer) |
| 胡瀚文 | 巫坤品老師 | 利用蛋白質交互作用網路來探討癌症相關反應路徑和膜蛋白資料之間的關係(Using Protein–Protein Interaction to Estimate the Significance of Membrane Proteins to Cancer Pathways) |
| 林珮恩 | 李國彬老師 | 以非單調性的時間序列基因表達數據建構前饋式網路(Identifying Non-monotonicity in Time-series Gene Expression Data: on The Construction of Feed-Forward Network Motifs) |
| 潘佳屏 | 楊永正老師 | 細菌表面多醣合成蛋白質與鮑氏不動桿菌毒性相關性研究(A correlation study between surface polysaccharide synthesis protein and the virulence of Acinetobacter baumannii isolates) |
| 林清平 | 李國彬老師 | 五端非轉譯區調控元件對微核糖核酸基因調控之影響(5′ UTR regulatory elements and miRNA-mediated gene regulation) |
| 林瀚甄 | 楊永正老師 | 運用雲端分析新世代定序資料(Next Generation Sequencing (NGS) data analysis on cloud environment) |
| 黃鶴池 | 李國彬老師 | 以整體特徵挑選方法分析乳癌幹細胞的基因表現資料(Ensemble feature selection for analyzing gene expression data of breast cancer stem cells) |
| 林姸慧 | 黃宣誠老師 | 長鏈非編碼核糖核酸關聯之蛋白質交互網路及其功能分析(Identification of LncRNA-Associated Protein-Protein Interaction Networks and Their Functions) |
| 吳佳真 | 劉德明老師 | 基於語法相似度對應台灣手術健保碼與SNOMED CT議題探討之研究(An Investigation of Lexical Similarity-based Alignment between Taiwan National Health Insurance Procedure Codes and SNOMED CT) |
| 張廷宇 | 陳麗芬老師 | Theta波穿顱磁刺激對藥物難治型重鬱症病患神經調控之腦磁圖研究(Neuromodulation by Theta-Burst Stimulation in Treatment-Resistant Major Depression: an MEG Study) |
| 2013年畢業 |
||
| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 周楷茗 | 楊永正老師 | 由新世代外顯子定序數據中篩選與遺傳性癌症相關基因變異的方法(A method to screen gene variations that are associated with familial cancers based on the next generation exome sequencing data) |
| 呂淑雯 | 巫坤品老師 | 比較人類成體細胞、誘導性多弁鈮F細胞及胚胎幹細胞之間的蛋白體路徑分析 (Pathway-based comparative proteomics of human somatic cells, induced pluripotent stem cells, and embryonic stem cells) |
| 許香蘭 | 黃衍文老師 | 擬定長期照護保險之IHE整合規範(Drafting IHE Profile of Long-term Care Insurance) |
| 王悉剛 | 楊永正老師 | 鮑氏不動桿菌的比較基因體研究(Comparative genome analysis of Acinetobacter baumannii) |
| 邱賀晨 | 楊永正老師 | 急性骨髓性白血病細胞RNA序列的生物資訊分析(Bioinformatics analysis of RNA sequences of the acute myeloid leukemia (AML) cells.) |
| 李佩珊 | 劉德明老師 | 以本體論為基礎建立個人化醫學報告之知識庫(Applied Ontology-based Architecture to Develop Personalized Knowledgebase for Medical Reports) |
| 王國豪 | 黃衍文老師 | 建立以病歷再利用為基礎之持續性醫療品質指標研究─以臨床成效指標為例(A Study of Continuous Medical Quality Indicators Based on Medical Records Reuse — Use of Taiwan Clinical Performance Indicators) |
| 李博文 | 劉德明老師 | 以新一代平板電腦來改善外科系統電子病歷繪圖作業(Improve Illustrations in Electronic Medical Records of Surgical Domain with Tablet PC) |
| 葉信伶 | 江博煌老師／劉德明老師 | R語言網路應用程式之開發–“Heat Map” 運用在環境健康風險評估之集群分析(R language Web Application Development– Invent “Heat Map” Disease Clustering Analysis for Environment Health Risk Assessment) |
| 蔡承峰 | 王學偉老師 | 小核醣核酸定序資料分析及未知微核醣核酸功能註解工具(miRDiscovery: A tool for smRNA-Seq data analysis and novel miRNA functional annotation) |
| 陳臣揚 | 鍾翊方老師／王學偉老師 | 藉由外顯子定序資料鑑別癌症驅動突變及驅動基因(Using Exome-Seq data to identify cancer driver mutations / genes) |
| 陳俞妏 | 宋晏仁老師／劉德明老師 | 建置巨量資料倉儲系統─以健保資料為例(Building a Big Data Warehousing System for National Health Insurance Research Data) |
| 楊耕契 | 黃宣誠老師 | 預測蛋白質交互作用網路微型核醣核酸調控模組(Mirin:Identifying MicroRNA Regulatory Modules in Protein-Protein Interaction Network) |
| 盧聖傑 | 張博論老師 | 建立銀髮族智慧型手機使用能力評估與訓練模式之研究(The Study of Smartphone Usage Competency Assessment and Training for the Elderly) |
| 白馥慈 | 劉德明老師 | 巨量資料分析—以健保資料為例(Big Data Analysis for National Health Insurance Research Data) |
| 廖科棨 | 宋晏仁老師／劉德明老師 | 建立結構化電子報告系統-以整形外科手術報告為例(Building Structured Electronic Reporting System - Pilot study in the Plastic Surgery) |
| 鍾清勝 | 楊永正老師 | 於發展中國家建立醫院資訊系統的可行性研究(Feasibility study of establishing a hospital information system in a developing country) |
| 蔣嘉興 | 張博論老師 | 動態性問卷於社區整合式篩檢之應用研究(The Study of Using Dynamic Questionnaire System for Integrated Community-based Screening) |
| 江東鴻 | 張博論老師 | 在加護病房建構一個針對敗血性休克病患的 即時性暨電子化”早期目標導向治療”表單(Implementing a Checklist for “Early-goal-directed-therapy” (EGDT) of Septic Shock Providing Digitized and Real-time Feedback in Intensive Care Units) |
| 劉家彣 | 張博論老師 | 從工作分析探討急診資訊系統之界面設計(Analyzing Interface Design for the Emergency Department Information System (EDIS) from Work Study Perspective) |
| 翁偉楷 | 張博論老師 | 動態式社區整合式篩檢之行動輔助系統開發(Developing mobile support system for dynamic integrated community-based screening) |
| 莊偉宏 | 楊永正老師 | 利用基因表現標幟方法預測對賀癌平治療有效的乳癌病人(Prediction of Herceptin-responsive breast cancer patients by using a gene expression biosignature approach) |
| 曾逸璿 | 彭智楹老師 | 利用3D粒線體形態分析得知細胞週期中的粒線體品質控管與生成機制(3D Mitochondrial Morphological Analysis Reveals Mitochondrial Biogenesis and Quality Control in Cell Cycle) |
| 張簡文昇 | 劉德明老師 | 共享個人健康照護記錄之授權研究(Research on Authoring of Shared Personal Healthcare Records) |
| 江序農 | 劉德明老師 | 以雲端架構建立跨機構臨床文件分享系統之研究(Research on Clinical Document Sharing System Based on Cloud Computing Architecture) |
| 王淳莆 | 郭博昭老師 | 長期雲端血壓記錄方法之建立(Long-term Blood Pressure Monitoring Using Cloud Computing Technology) |
| 蕭瑞廷 | 李友專老師 | 人類病毒疣(經由人類乳突病毒引起)可能為年輕患者的風險因子發生乳癌透過關聯性資料採礦(Viral warts (HPV) might be a risk factor for younger patients to develop breast cancer by association data mining) |
| 陳泓銘 | 許世宜老師 | 以分子動力學模擬探討鹽類效應對於β-類澱粉胜肽聚集過程之影響(Molecular Dynamics Simulations of the Salt Effect on Amyloid Beta Peptide (Aβ14-23) Aggregation Process) |
| 蘇郁婷 | 張博論老師 | 醫學生行動個人化學習互動輔助系統之雛型設計(Prototyping an Individualized Mobile Interactive Learning Support System for Medical Students) |
| 林秀雯 | 張博論老師 | 慢性腎疾病個人健康行動日誌系統雛形設計(Mockup Design of Personal Health Diary App for Patients with Chronic Kidney Disease) |
| 2012年畢業 |
||
| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 廖皓涵 | 黃宣誠老師 | 乳癌中選擇性多腺酸化模式與微型核糖核酸調控之關聯研究(MicroRNA Modulation of Alternative Polyadenylation in Breast Cancer Cells) |
| 陳衍光 | 李國彬老師 | 以序列和物理化學性質預測膜蛋白質種類(Predicting membrane protein types using protein topology, domains, signal peptides and physicochemical properties) |
| 陳薇琳 | 劉德明老師 | 臺灣登革熱疫情之時空群集研究(Space-Temporal Clustering of Indigenous Dengue Fever in Taiwan) |
| 陳敬詒 | 鍾翊方老師 | 利用階層式系統預測微核醣核酸標靶基因(Prediction of microRNA target genes using a hierarchical fuzzy system) |
| 李覺白 | 鍾翊方老師 | 藉由RNA-Seq資料找尋非典型畸胎橫紋細胞瘤之嵌合轉錄本(RNA-Seq for Discovery of Chimaeric Transcripts in Atypical Teratoid Rhabdoid Tumor) |
| 李鎮宇 | 鍾翊方老師 | 藉由外顯子序列資料探究非典型畸胎橫紋細胞瘤之染色體變異(Exome-Seq for Deciphering Chromosome Abnormalities in Atypical Teratoid Rhabdoid Tumor) |
| 曾于銓 | 楊永正老師 | 鑑定靈芝的新基因：以岩藻糖轉移酵素作為例子(Annotation of the ligand specificity of fucosyltransferase in Ganoderma lucidum) |
| 陳逸凡 | 李國彬老師 | 電腦分析及實驗驗證微型核醣核酸及轉錄因子所參與的前饋式調控迴路 (Computational identification and laboratory validation of microRNA and transcription factor-mediated feed-forward loops) |
| 李孝瑞 | 張博論老師 | 智慧型手機於建立兒童用藥安全之研究(Developing a Smartphone based Medication safe Support System for Child) |
| 張詩婷 | 王學偉老師 | 微小定序資料分析流程之建構，並應用於兒童腦瘤之研究(Construction of an all-in-one microRNA analysis pipeline for smRNA-Seq data: Pediatric brain tumors as an example) |
| 林雨芬 | 劉德明老師 | 基於臨床資訊建構家族樹之研究(Research on Constructing the Pedigree by Using the Clinical Information) |
| 2011年畢業 |
||
| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 張乃文 | 楊永正老師 | 蛋白質交互作用數據的品質評估(Quality assessment of protein-protein interaction data) |
| 高星儀 | 劉德明老師 | 以連續照護模板建置自動產出完整電子病歷之研究(Research on Applying the Continuity Care Document to Generate a Medical Record with Entry Level) |
| 黃鼎鈞 | 張博論老師 | 發展一適用於問題導向教學法之本體論與知識表達工具：以貧血為例(Developing a tool to represent ontology and knowledge for PBL education in a case of anemia) |
| 李佳璇 | 楊永正老師 | 個人基因體研究系統的開發與應用(Establishment and application of an information management system for personal genomics studies) |
| 楊惟鈞 | 黃宣誠老師 | 運用基因演算法挑選合適的生物調控路徑(Applying Genetic Algorithm on Determination of Regulatory Pathway) |
| 孫行人 | 鍾翊方老師 | 透過電腦運算模式挖掘單調基因：以幹細胞時序分化資料為例(In silico approach for discovering monotonic genes from multiclass and time-series stem cell microarray data) |
| 陳意雯 | 張博論老師 | 中高齡飲食健康自我管理智慧型手機應用程式之開發研究(Developing the Smartphone Applications of Dietary and Health Self-Management for the Elder People) |
| 蔡東穎 | 劉德明老師 | 以健檢資料為基礎之缺血性中風預測模型探討(A Study on Constructing the Ischemic Stroke Risk Prediction Model from the Physical Checkup Data) |
| 陳興和 | 劉德明老師 | 使用自動化簡易的方法從格式化病理報告的內容呈現腫瘤查驗清單之摘要項目 (Automatic and Simple Method for Presenting Synoptic Elements of Cancer Checklist from Formatted Pathologic Report) |
| 鍾偉國 | 巫坤品老師 | 依據蛋白質交互作用的基因本體論功能性分析(A PPI-based GO functional enrichment analysis for “omics ” data) |
| 陳珮瑩 | 李友專老師 | 運用類神經網路預測環境因子於氣喘病人之影響(Predicting the effect of the environment parameters in asthma patients using Artificial Neural Networks) |
| 徐瑞澤 | 楊永正老師 | 新世代定序結果分析：發現與疾病相關之單鹼基變異及融合基因的高通量分析方法 (Analysis of the next generation sequencing results：Discovery of disease-associated single nucleotide variants and fusion genes by high throughput analysis) |
| 嚴守正 | 李國彬老師 | 溶酶體、過氧化氫酶體與內質網蛋白定位預測準確性之改善 (Towards Improving Accuracy of Subcellular Localization Prediction for Lysosomal, Peroxisomal and ER Proteins) |
| 黃盈禎 | 鍾翊方老師 | 以刪減叢集法找尋蛋白質磷酸化鄰近區域之特定樣本(Q-Motif: Phosphorylation Motif Finding by Subtractive Clustering) |
| 胡咨含 | 陳麗芬老師 | 利用靜息態腦磁波區分憂鬱症與躁鬱症之研究(Pattern Classification of Spontaneous Magnetoencephalographic Activity between Unipolar and Bipolar Disorders) |
| 劉若芬 | 巫坤品老師 | 一個以癌症為導向的分泌蛋白體資料庫建置(Development of a Cancer-oriented Secretome Database) |
| 高愷懃 | 巫坤品老師 | 癌症分泌蛋白體資料庫分析工具建置(Development of Analysis Tools for Cancer Secretome Database) |
| 郭姿祺 | 黃宣誠老師 | 乳癌轉移相關之蛋白質交互作用網路功能模組(Finding Metastasis-related Functional Modules in Protein Interaction Network of Breast Cancer) |
| 葉騰文 | 黃宣誠老師 | 微型核醣核酸於轉錄網路階層之調控機制(Characteristics of MicroRNA Regulation in Transcription Network Hierarchy) |
| 梁詩屏 | 黃宣誠老師 | 蛋白質網路功能模組在腫瘤演變中的動態特性(Dynamic Features of Functional Network Modules during Tumor Progression) |
| 吳幸姿 | 劉德明老師 | 探討臨床研究資訊相關標準以實現健康照護資料的二次應用(Research on Clinical Research Informatics Related Standards to Achieve the Secondary Use of Healthcare Data) |
| 方麗萍 | 張博論老師 | 探討學校護理師資訊能力及資訊素養訓練模式之建議(A Study of the Informatics Competency of the School Nurse and the Suggestion of Information Literacy Training Model) |
| 2010年畢業 |
||
| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 徐千婷 | 楊永正老師 | 探討在基因層次上影響乳癌病人預後的協同作用(Explore the Possible Synergisitic Effects on Survival in Breast Cancer Patients) |
| 郭明娟 | 張博論老師 | 智慧型手機於建立新生兒出院健康記錄與主動、滲透性服務與支援模式之創新研究 (An Innovative Study of Developing Smartphone-based Proactive and Pervasive Infant Health Record, Service and Support Systems) |
| 顏海威 | 鍾翊方老師 | 以機器學習的方式尋找基因間之交互作用(Finding gene-gene interaction - A machine learning approach) |
| 張詠婷 | 李友專老師 | 利用主動式RFID 近距感應特性建立接觸史推論模式(Using Active RFID Proximity Sensing in Building a Contact History Inferencing Model) |
| 吳尚容 | 鍾翊方老師 | 挖掘具單調基因表現量起伏之標誌基因：以多類別癌症資料與幹細胞分化時序資料為例(Discovery of Monotonic Genes from Multiclass and Time-series Microarray Data) |
| 林冠廷 | 楊永正老師 | 註解靈芝全基因體 (Annotation of the Ganoderma lucidum genome) |
| 黃祥瑋 | 劉德明老師 | 設計與建置電子急診轉診文件雛型系統之研究(Design and Implement the prototype of Emergency Department System for Referral Document) |
| 張淑娟 | 張傳雄老師 | 重疊性基因特徵之運算編輯系統(Computational Editing of Overlapped Genomic Features) |
| 王櫻婷 | 劉德明老師 | 運用標準命名法於用藥紀錄互通之研究(Research on Interoperability of Medication Records with Standardized Nomenclature) |
| 黃清閔 | 巫坤品老師 | 以蛋白質之同素異構物組成檔案對於胃癌之診斷(Diagnosis for Gastric Cancer Based on Protein Isoforms) |
| 楊軒佳 | 李友專老師 | 事先偵測並減少藥物交互作用的無效警示(Proactive identification and elimination of pseudo- alerts for drug-drug interaction) |
| 陳軍赫 | 許世宜老師 | 利用分子動力學模擬探討β-類澱粉胜肽聚集過程之研究(Molecular Dynamics Simulation on Aggregation Process of Amyloid Beta Peptide (Aβ14-23) ) |
| 黃彥智 | 李友專老師 | 轉換複雜用藥處方為可行、有彈性之個人化用藥排程(Translating complex prescriptions into feasible, flexible and personal medication schedules) |
| 柯懿昀 | 劉德明老師 | 在電子健康照護環境中個人病歷資料授權之研究(Research on the Personal Consent in the Electronic Healthcare Environment) |
| 林建伍 | 劉德明老師 | 以跨機構影像分享及本體論為基礎建置符合臨床需求之影像資訊共享系統(Implement an Image Information Sharing System for Clinical Requirements based on IHE XDS-I Profile and Ontology) |
| 林哲如 | 劉德明老師 | 設計與實作符合臨床文件架構的臨床文件產生器(Design and Implement a Generator with Clinical Document Architecture standard) |
| 涂志君 | 許世宜老師 | β-類澱粉胜肽聚集過程之分子動力學研究(Molecular Dynamics Simulation on the Aggregation Process of the Amyloid Beta Peptide in Aqueous Solution) |
| 吳克文 | 張傳雄老師 | 高度保留性H3N2流感病毒抗原決定位之生物資訊分析(Highly Conserved Influenza A Epitope Sequences as Candidates of H3N2 Flu Vaccine Targets) |
| 2009年畢業 |
||
| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 陳之恩 | 蔡世峰老師 | |
| 周怡廷 | 劉德明老師 | Implementing a Personal Health Record System for Knowledge Sharing based on IHE Cross-Enterprise Document Sharing and Ontology |
| 徐霈君 | 楊永正老師 | A protein interaction-based model for NRG1-CACNG2 interaction in schizophrenia |
| 沈曉萍 | 鍾翊方老師 | Neuromagnetic Responses to Facial Expression Images in Patients with Major Depressive Disorder |
| 陳毅誠 | 鍾翊方老師 | Identification of protein phosphorylation motifs through exploratory data analysis |
| 施冠卉 | 楊永正老師 | Gene expression correlation in disease-perturbed cells in disease-perturbed cells. |
| 曾聖棋 | 張博論老師 | The study of outdoor environment cognition assistant system for visually impaired |
| 郭盈秀 | 巫坤品老師 | Evaluation of the Effectiveness of Confidence Level in Protein Secondary Structure Prediction |
| 張芳瑜 | 巫坤品老師 | Colorectal Cancer Detection by Mass Spectrometry and Computational Proteomics |
| 詹皇奕 | 吳韋訥老師 | The genome sequence of Mycoplasma fermentans M64 |
| 施瀚博 | 張傳雄老師 | |
| 吳明侃 | 林文昌老師 | A prototype classification schema of ICD-genetic disorder system: Chapter 2 neoplasm as an example |
| 李孟霜 | 巫坤品老師 | Comparison of microRNA-regulated Protein Interaction Networks among Worm, Fly and Human |
| 蔡黛鈴 | 劉德明老師 | The Design and Construction of an Audit-based and Standard-compliant Medical Record Management Prototype System |
| 吳宜樺 | 李友專老師 | A Study of Personal Health Record Standard Transformation |
| 高俊棟 | 李友專老師 | |
| 楊清琅 | 劉德明老師 | |
| 黃俊喬 | 劉德明老師 | The Study of Standard-based Electronic Case Report Form Design System |
| 吳鴻中 | 巫坤品老師 | Effects of microRNA Regulation on Noise in Gene Expression |
| 楊維怡 | 劉德明老師 | Evaluation Influenza Vaccination Effectiveness and Cost-Benefit for Working Adults |
| 許書睿 | 蔡世峰老師 | Microbial Genomics Research: Sequencing of Klebsiella pneumoniae cps Region and Comparative Analysis |
| 白哲濬 | 黃宣誠老師 | MicroRNA Co-regulation in Transcriptional Regulatory Network of Drosophila melanogaster |
| 詹景雯 | 張傳雄老師 | Interfacing functional subnetworks in Escherichia coli K-12 |
| 2008年畢業 |
||
| 姓名 | 指導教授 | 論文題目 |
|---|---|---|
| 楊 崎 | 張傳雄老師 | Signal integration in the phosphate network of Escherichia coli |
| 丘祐瑋 | 黃宣誠老師 | Prediction of Functional Associated Proteins Using Topological Similarity in Protein-Protein Interaction Network |
| 丁 瑩 | 吳韋訥老師 | Characterization of Lipid A Species by Computational Analysis of Mass Spectrometry Data |
| 謝燕婷 | 鐘翊方老師 | Prediction of Zinc-binding Sites Using Support Vector Machine |
| 曾景鴻 | 張傳雄老師 | Genome-wide computational analysis of genes regulated by novel sigma-like factors in Escherichia coli K-12 |
| 佘光堉 | 楊永正老師 | In silico discovery of signaling pathway |
| 陳奎銘 | 鐘翊方老師 | Effects of Age on EEG Activity during Driving |
| 張盈盈 | 林明薇老師 | Explore the relationship between tobacco-related carcinogens, associated gene and cancer by literature-mining |
| 楊函穎 | 吳韋訥老師 | Comparative metabolomics of Halobacterium sp. NRC-1 and Haloarcula marismortui via integrated network analysis |
| 黃志成 | 林明薇老師 | An integrated graphical user platform of high-throughput SNP data analysis for disease gene mapping |
| 林慶豐 | 許世宜老師 | Structural and Thermodynamic Properties Analysis of the Escherichia coli FIS-DNA Complex Using Molecular Dynamics Simulation |
| 郭天爵 | 張傳雄老師 | Computational construction and analysis of candidate co-operation transport systems in Escherichia coli K-12 based on expression data of known transporters |
| 蔡曜宇 | 林文昌老師 | Cancer associated genes interrogated through CGH display system |
| 陳世昌 | 林文昌老師 | A visualization tool for ncRNA (miRNA, tRNA) expression profile in human tissues |
| 吳依青 | 許世宜老師 | In silico Investigation of Drug-Target Interactions for N1 Neuraminidase |
| 張正義 | 許世宜老師 | Study of the Aggregation of β-amyloid Peptide (Aβ) :Monte Carlo Simulations and Binding Free Energy Calculations |
| 廖鳳琴 | 巫坤品老師 | A New Representation on Protein Sequences |
| 杜雨龍 | 巫坤品老師 | Protein Fingerprint and Its Application to Protein Clustering |
| 洪鼎坤 | 巫坤品老師 | Gastric Cancer Classification based on Serum Amyloid A Isoforms |
| 許俊威 | 黃宣誠老師 | Characterization of microRNA-regulated protein-protein interaction network |
| 翁惠瑩 | 蔡世峰老師 | Genomic Analysis of HCC : TP53 Mutation and Chromosome 4q LOH |
| 林良俊 | 林達顯老師 | Structural simulation of Aβ60 in lipid environment |
| 呂宗謙 | 李友專老師 | Prognostication in Patients from In-hospital Resuscitation |
| 林昌宏 | 陳麗芬老師 | Prediction of Therapeutic Continuous Positive Airway Pressure using Factor Analysis in Obstructive Sleep Apnea |
| 張文靜 | 張博論老師 | |
| 張慧柔 | 張博論老師 | The Study of Applying the Multimedia-Vector-Animation-Based Technique in Health Web Information Search and Presentation |
| 黃道政 | 張博論老師 | |
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